PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G23050.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 418aa MW: 44401.7 Da PI: 6.6895

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G23050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.3	5.5e-15	64	145	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ + +Li+a e+ +l+rg+l+ p+W+ev++++ ++ g++++pk qCk++++ l+k+yk +k+ + ++pyf++l+ ONIVA02G23050.1 64 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKQPKsdvQCKNRIDTLKKKYKVEKAKPDS-------SWPYFHRLD 145 ***********************************87889988664334**********99998886.......5****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MDDDGGASPS SSLSPSRSPS PLPVADPVTV AAAPPGHLAL AIPIPKPGSS SGGGGGGGGR 60 EDAWSDGATS TLIDAWGERF VALGRGSLRH PQWQEVAEVV SSRDGYSKQP KSDVQCKNRI 120 DTLKKKYKVE KAKPDSSWPY FHRLDTLLAP VHKPAGAYPA AAAGAAGAGN SGSNSAAAAT 180 AARSTAPMAP RVNFPQRTRT QFLPSSGVKR RMPSPPQVSA SSESSDGFPP EPPMAAANGK 240 RRREVEEEVN GADSGHRTQG LRELAQAIRR FGEVYERVEF AKREQELRME RDRLEAAREL 300 EDQRVQFFLK MQMELSKANN AGASAAAAAV GAVATAIAAA DGNGTRRTAM ATDVGTSSNH 360 HVRYRFKDSR HCHAAPQQPQ HQYNENNAAE AARGTGNGSD TDNKEDEDEA EDEEDESQ

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MDDDGGASPS SSLSPSRSPS PLPVADPVTV AAAPPGHLAL AIPIPKPGSS SGGGGGGGGR  60
EDAWSDGATS TLIDAWGERF VALGRGSLRH PQWQEVAEVV SSRDGYSKQP KSDVQCKNRI  120
DTLKKKYKVE KAKPDSSWPY FHRLDTLLAP VHKPAGAYPA AAAGAAGAGN SGSNSAAAAT  180
AARSTAPMAP RVNFPQRTRT QFLPSSGVKR RMPSPPQVSA SSESSDGFPP EPPMAAANGK  240
RRREVEEEVN GADSGHRTQG LRELAQAIRR FGEVYERVEF AKREQELRME RDRLEAAREL  300
EDQRVQFFLK MQMELSKANN AGASAAAAAV GAVATAIAAA DGNGTRRTAM ATDVGTSSNH  360
HVRYRFKDSR HCHAAPQQPQ HQYNENNAAE AARGTGNGSD TDNKEDEDEA EDEEDESQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	5e-31	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G23050.1