PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G19960.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 375aa MW: 39661.7 Da PI: 4.8796

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G19960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.5	2e-24	28	140	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 rWt+qe+l+Lie++r +e r + + + +p+W++v++++r++g+er+++qC+++w+nl+++ykkike+ ONIVA02G19960.1 28 RWTRQEILVLIEGKRMVEGRGGGRGgrgraaaaaaaaaaaaaggsggeaavaALEPKWAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIKEW 121 8************999988843224557778888999999999999999888************************************ PP trihelix 68 ekkrtsessstcpyfdqle 86 e+ ++++ + p f ++ ONIVA02G19960.1 122 ERAAAATAPPREPSFWAMR 140 *9999988999998886 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MSTAGDPAAA AAAAAAATPS GRAPRLPRWT RQEILVLIEG KRMVEGRGGG RGGRGRAAAA 60 AAAAAAAAAG GSGGEAAVAA LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKE 120 WERAAAATAP PREPSFWAMR NDARRERRLP GFFDREVYDI LDGRGRGTLV APSGGGNAAA 180 GEEEPARAAA EVEVEVEEEE ETGKTRARAE ETVFDSGRPA AEESLFSDDE EEDDDDEAPP 240 ATAAAVAATA QAPPRAVIAL PISGTSKDKQ PEQQAASRGT PPPPPPPTTQ QQQAGQKRRR 300 ADDDEEEEDD GRRGGELQSK LVEILDRSSR MVAAQLEAQN ANSRLDREQR RDQAASLAVV 360 LGRLADALGR IADKL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MSTAGDPAAA AAAAAAATPS GRAPRLPRWT RQEILVLIEG KRMVEGRGGG RGGRGRAAAA  60
AAAAAAAAAG GSGGEAAVAA LEPKWAAVAE YCRRHGVERG AVQCRKRWSN LAGDYKKIKE  120
WERAAAATAP PREPSFWAMR NDARRERRLP GFFDREVYDI LDGRGRGTLV APSGGGNAAA  180
GEEEPARAAA EVEVEVEEEE ETGKTRARAE ETVFDSGRPA AEESLFSDDE EEDDDDEAPP  240
ATAAAVAATA QAPPRAVIAL PISGTSKDKQ PEQQAASRGT PPPPPPPTTQ QQQAGQKRRR  300
ADDDEEEEDD GRRGGELQSK LVEILDRSSR MVAAQLEAQN ANSRLDREQR RDQAASLAVV  360
LGRLADALGR IADKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-44	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G19960.1