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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G06550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 248aa MW: 27668.2 Da PI: 8.199 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.7 | 2.1e-25 | 29 | 78 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s ONIVA02G06550.1 29 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAS 78 89*********************************************986 PP | |||||||
2 | K-box | 40.2 | 1.4e-14 | 110 | 190 | 18 | 98 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + a+Lk+e+ + +R++ Ge+L++L++++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k +l een +L++++ ONIVA02G06550.1 110 SSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQV 190 66789**********99************************************************************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MAGGGGGGGR GEGEGRAATG KRERIAIRRI DNLAARQVTF SKRRRGLFKK AEELSILCDA 60 EVGLVVFSAT GKLFQFASTS MKQIIDRYNS HSKTLQRAEP SQLDLQGEDS STCARLKEEL 120 AETSLRLRQM RGEELHRLNV EQLQELEKSL ESGLGSVLKT KSKKILDEID GLERKRMQLI 180 EENLRLKEQV SRMSRMEEMQ PGPDSEIVYE EGQSSESVTN ASYPRPPPDN DYSSDTSLRL 240 GLSLFSSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-68 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA02G06550.1 |