PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G06210.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 479aa MW: 50403.3 Da PI: 7.0134

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G06210.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	73.9	2.8e-23	196	244	1	49
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cq+egC+adls ak+yhrrhkvC++h+ka++vl++g++qrfCqqCsr ONIVA02G06210.1 196 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRL 244 6***********************************************7 PP
2	SBP	47	7e-15	265	295	47	77
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 +rfh l efDe+krsCr+rL +hn+rrrk++ ONIVA02G06210.1 265 ARFHVLAEFDEAKRSCRKRLTEHNRRRRKPT 295 7****************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MAVPAAAVAA DIVDFGYAAP MPPPYVGFDP AGMGGERQLF QHGGACHGLY DGGLDFSAAA 60 AFQEAATLGV GLPGGNLLQS LAPPAAAAAT PSSLQMPMMM SLPGLPATAA DVYPFGGGGF 120 VKREDGPVLD VVGGGGGGRI GLNLGRRTYF SPADVLAVDR LLLRSRLGGM GMEMGMGMGV 180 LGLGLAAAAH HHQPPRCQAE GCKADLSAAK HYHRRHKVCD FHAKAAAVLA AGKQQRFCQQ 240 CSRLAPIPRN HVAARWDPAG TRVAARFHVL AEFDEAKRSC RKRLTEHNRR RRKPTAGGQS 300 SKDSPPPPPS KKGTDASIAS SYTSCDHHKA AASTTTASGV SCLQELADHH DVGGGHQAAM 360 AAPPPPTLSL AALPPQEEED EDEDGGLGTV LMMQQHHQRR RLQHDGDGDD DVAAAAAHHH 420 LMRSLARQQQ QHRHSSGCSN NNDGDDDDHN NNILSCSSAS DQQNSSNNNN MHFFEVDFI

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MAVPAAAVAA DIVDFGYAAP MPPPYVGFDP AGMGGERQLF QHGGACHGLY DGGLDFSAAA  60
AFQEAATLGV GLPGGNLLQS LAPPAAAAAT PSSLQMPMMM SLPGLPATAA DVYPFGGGGF  120
VKREDGPVLD VVGGGGGGRI GLNLGRRTYF SPADVLAVDR LLLRSRLGGM GMEMGMGMGV  180
LGLGLAAAAH HHQPPRCQAE GCKADLSAAK HYHRRHKVCD FHAKAAAVLA AGKQQRFCQQ  240
CSRLAPIPRN HVAARWDPAG TRVAARFHVL AEFDEAKRSC RKRLTEHNRR RRKPTAGGQS  300
SKDSPPPPPS KKGTDASIAS SYTSCDHHKA AASTTTASGV SCLQELADHH DVGGGHQAAM  360
AAPPPPTLSL AALPPQEEED EDEDGGLGTV LMMQQHHQRR RLQHDGDGDD DVAAAAAHHH  420
LMRSLARQQQ QHRHSSGCSN NNDGDDDDHN NNILSCSSAS DQQNSSNNNN MHFFEVDFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	294	KRSCRKRLTEHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	2e-28	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G06210.1