PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G05990.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 372aa MW: 39214.8 Da PI: 4.0709

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G05990.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.3	2.3e-09	71	149	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkr 71 +Wt e+laL++ + +++ +r+ ++ ++W+ v++++ r rg r + +C+ +we l+ +y ++++e ++ ONIVA02G05990.1 71 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAIVAENLaasrgraaRGRGRGRAASECRRRWEALAAEYGVVRRWEVRG 149 5*****************************************9999999********************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MAMDPDAAEW PCIIQALPAL PPSPSSTGVP RLPTMVQALP AATDPPPAAA RLRRGAEPPS 60 PRRTRSGGAP EWTPAETLAL VAEVAAVDDG WSRSVSAFQK WAIVAENLAA SRGRAARGRG 120 RGRAASECRR RWEALAAEYG VVRRWEVRGA GGYWRMSAAA RRKAGLPADF DAEVYGAMEA 180 LTLVEEALLA DATAGAGGAE IGEKSAAAAE VGEGDEVEAG EEDGNGDRGE VGEEDEGEIG 240 EDGEEDGNEM VEVEDDGNAD DEDTQPDGGN AAASDDLEVC ETGANNEGKK SQTDACELAN 300 KLQENAQHIH MLLKEEAGEN ENHNLAISSD SMETTRQKGD ELIKSLGGLV SYLNQFTDLI 360 KENGFENVVG MS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MAMDPDAAEW PCIIQALPAL PPSPSSTGVP RLPTMVQALP AATDPPPAAA RLRRGAEPPS  60
PRRTRSGGAP EWTPAETLAL VAEVAAVDDG WSRSVSAFQK WAIVAENLAA SRGRAARGRG  120
RGRAASECRR RWEALAAEYG VVRRWEVRGA GGYWRMSAAA RRKAGLPADF DAEVYGAMEA  180
LTLVEEALLA DATAGAGGAE IGEKSAAAAE VGEGDEVEAG EEDGNGDRGE VGEEDEGEIG  240
EDGEEDGNEM VEVEDDGNAD DEDTQPDGGN AAASDDLEVC ETGANNEGKK SQTDACELAN  300
KLQENAQHIH MLLKEEAGEN ENHNLAISSD SMETTRQKGD ELIKSLGGLV SYLNQFTDLI  360
KENGFENVVG MS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	122	RGRAARGRGRG
2	114	124	RGRAARGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	7e-12	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G05990.1