PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G05960.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 327aa MW: 35685 Da PI: 9.1824

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G05960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.9	1.7e-39	68	145	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC ++l +k+yhr+h+vCevhsk p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL +hn+rrrk+q+ ONIVA02G05960.1 68 RCQVEGCGVELVGVKDYHRKHRVCEVHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLYDHNARRRKPQT 145 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MDWMPPPKPT SPRSPPLLWD WADAAVPGSS SGEVSATAAA AAAAHPGRRR KEKRGRAEEG 60 GGGGGEVRCQ VEGCGVELVG VKDYHRKHRV CEVHSKFPRV VVAGQERRFC QQCSRFHALS 120 EFDQKKRSCR RRLYDHNARR RKPQTDVFSY ASARPPSSLL FDDNRQISFV WNKAPLSHVR 180 PFAISPWESS SEVGTTDGHI YLDKSHISKS LPAFNTDIDE LLPMKGPDAS LTASKFDGAP 240 DLQRALSLLS SSSCGLPDPV QQASRVIQFT GASQNNRELP PLNGGNSASA SCANVQTIAQ 300 PAQLVRFTMD ASSNACQSNF FGLNQIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	53	RRRKEK
2	125	142	KKRSCRRRLYDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	9e-38	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G05960.1