PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G05120.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 285aa    MW: 30610.6 Da    PI: 6.7381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G05120.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-222973145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k ienk  rqv fskRr+g++KKA+ELSvLC+a+vav+ fs+ g+
  ONIVA02G05120.1 29 KLIENKEARQVCFSKRREGVFKKASELSVLCGARVAVVFFSPAGR 73
                     569***************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MAKAAAEMDV GGGEGRRKRT RGRQRIEMKL IENKEARQVC FSKRREGVFK KASELSVLCG  60
ARVAVVFFSP AGRPHCFGHP SVPAVADRFL LGRSPTVAAA AAAEEEEAVV REFNRVEERL  120
KDALGAAARR RDALDEAARV AGVWNDADVR RAGLADLVSM LAALQRVQAE ASERVHDIIV  180
EEAMTHYTGA AAAAANLIDY LDAGPFVSHS PGSHDTTTKL IGGNAVHAPP LSFPPMIMPP  240
PLPPQFSHEF GYTDLAAGYG YNLDHGHGAA CETQEIHNAA ACDFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-20M-type_MADS family protein