PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G00390.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 711aa MW: 75232.1 Da PI: 6.2257

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G00390.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	100.6	1.2e-31	525	609	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r+ +e+r+++ lk+plWeevs++m++ g++r++k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+ ONIVA02G00390.1 525 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 609 8******************************************************************98.99999*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MQSGYGGVSE FQQYIMDPGA FAMSAPPQPA QAAAAAAAAA AAAAGGQELG APFRYQPLHH 60 HALPQHHHHH HPPPQMPPHL AHFGGAGGIP FTQQLLHQAA AAGHHPHLQL FHEQHHHQKH 120 QQQPPPPARW APQHHHHHHP HHHLGLDVEA AVPESSGAGA GSAASGAAAP PGVPPFLAAA 180 MSFKLGVDGG GGSGATGGTD DALNDGGGAG SGMMLHGGGG GGGGGDDEAA TESRLRRWPG 240 DEETSIKEPT WRPLDIDYIH SSSSSKRAPP KDKPATPDSP APPPPANYFK NKPDDNAAAA 300 SAASAGAVNY KLFSELEAIY KPGSGGAQTG SGSGLTGDDN AMLAPPMADL PDAAAANPPH 360 LNTSETSAGE DAHAVVQPQP QTQQPSGADA ARRKRKRRRQ EQLSASASFF ERLVQRLMEH 420 QESLHRQFLD TMERRERERA ARDEAWRRQE ADKFAREAAA RAQDRASAAA RESAIIAYLE 480 KISGETITLP PPAANPAPGA DEQDGVGKEV VAYDGEGSLQ LSSSRWPKHE VEALIRVRTG 540 LEDRFQEPGL KGPLWEEVSA RMAAAGYRRN AKRCKEKWEN INKYFRKAKE SGKKRPAHAK 600 TCPYFDELDR LYSRSGSGGG GGSSSAGGNG GEEAKGSSEL LDAVVKYPDV RCAPPGFPFD 660 GEQNEEGRTK DDGDEAHHDG DGDGDEEDVG VGVGRATDDH DDQVDESHDD H

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MQSGYGGVSE FQQYIMDPGA FAMSAPPQPA QAAAAAAAAA AAAAGGQELG APFRYQPLHH  60
HALPQHHHHH HPPPQMPPHL AHFGGAGGIP FTQQLLHQAA AAGHHPHLQL FHEQHHHQKH  120
QQQPPPPARW APQHHHHHHP HHHLGLDVEA AVPESSGAGA GSAASGAAAP PGVPPFLAAA  180
MSFKLGVDGG GGSGATGGTD DALNDGGGAG SGMMLHGGGG GGGGGDDEAA TESRLRRWPG  240
DEETSIKEPT WRPLDIDYIH SSSSSKRAPP KDKPATPDSP APPPPANYFK NKPDDNAAAA  300
SAASAGAVNY KLFSELEAIY KPGSGGAQTG SGSGLTGDDN AMLAPPMADL PDAAAANPPH  360
LNTSETSAGE DAHAVVQPQP QTQQPSGADA ARRKRKRRRQ EQLSASASFF ERLVQRLMEH  420
QESLHRQFLD TMERRERERA ARDEAWRRQE ADKFAREAAA RAQDRASAAA RESAIIAYLE  480
KISGETITLP PPAANPAPGA DEQDGVGKEV VAYDGEGSLQ LSSSRWPKHE VEALIRVRTG  540
LEDRFQEPGL KGPLWEEVSA RMAAAGYRRN AKRCKEKWEN INKYFRKAKE SGKKRPAHAK  600
TCPYFDELDR LYSRSGSGGG GGSSSAGGNG GEEAKGSSEL LDAVVKYPDV RCAPPGFPFD  660
GEQNEEGRTK DDGDEAHHDG DGDGDEEDVG VGVGRATDDH DDQVDESHDD H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	392	397	RRKRKR
2	392	398	RRKRKRR
3	393	398	RKRKRR
4	393	399	RRKRKRR
5	394	399	KRKRRR
6	395	399	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-39	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G00390.1