PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G50360.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SRS
Protein Properties Length: 340aa    MW: 34771.1 Da    PI: 7.627
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G50360.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702230.43.2e-711112694154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 
                      g+a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + +ass+ a+++a+aask++r l  ++q+++s+t++s+a+++
  ONIVA01G50360.1 111 GSATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGSASSSPATASAAAASKKPRLL--TSQTTTSHTSTSNATTP 202
                      7799*********************************************************************87..88999999********* PP

           DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++t+s          lP++v+++avfrcvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++
  ONIVA01G50360.1 203 RSFDTTSshqdasfresLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 269
                      ****99999*******************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MADVGMVVVT PAASFHHTHH HHHHHEAAAA AAAAAAAAAD PIFPLLSAGP CVLDPDKSAA  60
SGSAIQFWQP PPQPPSSAAG GNPNPSSSAF PYLKKPLPML DTGGGSSGSG GSATCQDCGN  120
QAKKDCGHQR CRTCCKSRGF DCSTHVKSTW VPAARRRERQ QLTGSASSSP ATASAAAASK  180
KPRLLTSQTT TSHTSTSNAT TPRSFDTTSS HQDASFRESL PRQVRAPAVF RCVRVTSIDD  240
GEDEYAYQAT VTINGHVFKG FLYDQGVDDG RGLAATSNDD STAGGVPNIS ELHLGGASIS  300
GNAMREGGSS MVHSDLYGGG GGSGGGPHIL GGSSYGNTMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.14e-61SRS family protein