PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G48230.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 412aa MW: 42614.3 Da PI: 9.0874

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G48230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.6e-40	92	169	2	78
-SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C vegC+adls++ ++yhrrhkvCe+hsk++vv+v+g++qrfCqqCsrfh l efDeekrsCr+rL++hn+rrrk+q+ ONIVA01G48230.1 92 CSVEGCAADLSKCvRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQP 169 *********9879**********************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MDWDAKMPSW DLGTVVGPSG GGGGGGGGGG ALDLKLGAPT SWKTTTTVSA ASAAPAAVAP 60 PPPPPASSSS SAAAAGKRAR AGQGQQAAVP ACSVEGCAAD LSKCVRDYHR RHKVCEAHSK 120 TAVVTVAGQQ QRFCQQCSRF HLLGEFDEEK RSCRKRLDGH NKRRRKPQPD PLNPGNLFAN 180 HHGAARFTSY PQIFSTAASM SPQETKWPAN VVKTEAADVF QESYYHALHL NGAGAAAAAS 240 IFHHGGNKAR KHHFPFLTAD HGGGAAAASP MFGCQPFTIT PSSESRSSSS SRHSNGKMFA 300 HDGGLDNCAL SLLSDNPTPT AQITIPQPLV AGGGQYGGGG GGDVSLTGLS YVRMAGKDTS 360 ILAKSATTTA TTATTPTTTS AQLQYHGYYH HHVSADQGSS DAAIQALPFS SW

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MDWDAKMPSW DLGTVVGPSG GGGGGGGGGG ALDLKLGAPT SWKTTTTVSA ASAAPAAVAP  60
PPPPPASSSS SAAAAGKRAR AGQGQQAAVP ACSVEGCAAD LSKCVRDYHR RHKVCEAHSK  120
TAVVTVAGQQ QRFCQQCSRF HLLGEFDEEK RSCRKRLDGH NKRRRKPQPD PLNPGNLFAN  180
HHGAARFTSY PQIFSTAASM SPQETKWPAN VVKTEAADVF QESYYHALHL NGAGAAAAAS  240
IFHHGGNKAR KHHFPFLTAD HGGGAAAASP MFGCQPFTIT PSSESRSSSS SRHSNGKMFA  300
HDGGLDNCAL SLLSDNPTPT AQITIPQPLV AGGGQYGGGG GGDVSLTGLS YVRMAGKDTS  360
ILAKSATTTA TTATTPTTTS AQLQYHGYYH HHVSADQGSS DAAIQALPFS SW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	167	KRSCRKRLDGHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-30	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G48230.1