PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G46660.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 479aa MW: 51085.4 Da PI: 4.302

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G46660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.9	1.9e-16	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n r +t+ kR++g++KKA EL +LCd+ vav+ ++++g ONIVA01G46660.1 11 IANPQTRATTYKKRKAGLIKKAGELATLCDIPVAVVCAGPDG 52 789999**********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MARRKTSIAL IANPQTRATT YKKRKAGLIK KAGELATLCD IPVAVVCAGP DGGAPTVWVS 60 PEGGDAIERY RALPAEKRAR HTHVAYLQEE LDKERAKLAR LRQKGRPGEL DPPDAVLDGM 120 SQDELQQLLA SIDATLLATA KRREALGLLP GADDDADGGG RRRDADVAGT NSVGVHGYQH 180 QEVHAPATCD PFHPYNAGVT LMQPGYNNAQ YMGGHGAVDM SGYQLQMQMP GNGSNNHSRL 240 AWGGFQPCNA TFVQPVYGNL QCWYNNVVDG NGEPCDAVVP SAGDPYMDIA GNDVYGNQMQ 300 PAPAANGGWH DPGTWGYDGG EPCKAIVPSS GDPYMGIGVY GNQMQPAPAP AANGCWHNPA 360 GTWGNDGEPC NAIVPSAGHP YIDIECDIDG NYIDTTVFDY QTTSTSDNFM DAPVQFIATG 420 SDESIVTNVT GCDETEFSID DLLQCSDASQ HSSGLEELHY LSDLADGFDF GCNFDVLLD

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MARRKTSIAL IANPQTRATT YKKRKAGLIK KAGELATLCD IPVAVVCAGP DGGAPTVWVS  60
PEGGDAIERY RALPAEKRAR HTHVAYLQEE LDKERAKLAR LRQKGRPGEL DPPDAVLDGM  120
SQDELQQLLA SIDATLLATA KRREALGLLP GADDDADGGG RRRDADVAGT NSVGVHGYQH  180
QEVHAPATCD PFHPYNAGVT LMQPGYNNAQ YMGGHGAVDM SGYQLQMQMP GNGSNNHSRL  240
AWGGFQPCNA TFVQPVYGNL QCWYNNVVDG NGEPCDAVVP SAGDPYMDIA GNDVYGNQMQ  300
PAPAANGGWH DPGTWGYDGG EPCKAIVPSS GDPYMGIGVY GNQMQPAPAP AANGCWHNPA  360
GTWGNDGEPC NAIVPSAGHP YIDIECDIDG NYIDTTVFDY QTTSTSDNFM DAPVQFIATG  420
SDESIVTNVT GCDETEFSID DLLQCSDASQ HSSGLEELHY LSDLADGFDF GCNFDVLLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RRKTSIALIANPQTRATTYKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31630.1	3e-17	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G46660.1