PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G24470.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 435aa MW: 45602.5 Da PI: 9.1143

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G24470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	108.2	5.4e-34	176	265	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.............SEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.............rfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++sg++qrfCqqCs rfh l+efDe+krsCr+rLa+hn+rrrk++ ONIVA01G24470.1 176 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSrivtlwvyvhvldRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 265 6*******************************************944444444444445*************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MMSGRMNAAG DESPFPFGAM QAPGPGAYVG FDHGAAAVAA AQRAGMLQHH HHHMYDGLDF 60 AAAMQFGGGQ DAPPHPQLLA LPPSMAAPPP PPMPMPLQMP MTMPMPGDVY PALGIVKREG 120 GGGGQDAAAG RIGLNLGRRT YFSPGDMLAV DRLLMRSRLG GVFGLGFGGA HHQPPRCQAE 180 GCKADLSGAK HYHRRHKVCE YHAKASVVAA SGKQQRFCQQ CSRIVTLWVY VHVLDRFHVL 240 TEFDEAKRSC RKRLAEHNRR RRKPAAAATT AVAAAKDAAA APVAAGKKPS GGAATSYTGD 300 NKNVVSMSAA KSPISSNTSV ISCLPEQGKH AAAAARPTAL TLGGAPPHES SAPQIGAMLH 360 HHHHHQQDHM QVSSLVHING GGGGGSNNIL SCSSVCSSAL PSTATNGEVS DQNNDNSHNN 420 GGNNNNMHLF EVDFM

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MMSGRMNAAG DESPFPFGAM QAPGPGAYVG FDHGAAAVAA AQRAGMLQHH HHHMYDGLDF  60
AAAMQFGGGQ DAPPHPQLLA LPPSMAAPPP PPMPMPLQMP MTMPMPGDVY PALGIVKREG  120
GGGGQDAAAG RIGLNLGRRT YFSPGDMLAV DRLLMRSRLG GVFGLGFGGA HHQPPRCQAE  180
GCKADLSGAK HYHRRHKVCE YHAKASVVAA SGKQQRFCQQ CSRIVTLWVY VHVLDRFHVL  240
TEFDEAKRSC RKRLAEHNRR RRKPAAAATT AVAAAKDAAA APVAAGKKPS GGAATSYTGD  300
NKNVVSMSAA KSPISSNTSV ISCLPEQGKH AAAAARPTAL TLGGAPPHES SAPQIGAMLH  360
HHHHHQQDHM QVSSLVHING GGGGGSNNIL SCSSVCSSAL PSTATNGEVS DQNNDNSHNN  420
GGNNNNMHLF EVDFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	264	KRSCRKRLAEHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G24470.1