PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G16990.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 407aa MW: 42727.3 Da PI: 4.4515

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G16990.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.8	2.9e-13	13	50	5	42
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +r t++kR++ + KKAeELS+LC+++va + +++ ONIVA01G16990.1 13 HRQKRAATYAKRKESLRKKAEELSTLCGVRVAFVCAGP 50 567899**************************999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MARRKIPIGL IAHRQKRAAT YAKRKESLRK KAEELSTLCG VRVAFVCAGP VVPGGGGGAA 60 GKEEVWESEE GVLAEYRALP PEARAQHAHR VYLKEEVGKE RAKLARVRQD GAFPSWDAAL 120 DGITADEARA LLESIDAARA AANARREALG LPDDGNGVDD DGGLDLQQQQ EHVPPGGSDA 180 VVVPVGHGVL QYTGSGGGNQ MQTTPAADGI NCADLYGAVP WDDTFQPQVM RTGDHFVPMD 240 GYLWQAPGNG WPDLATGCTN ESCSCNAAAA AAAMPAMYPP TLDTVHGSFL AAPAQPIPIA 300 FSTSTDFIDA PNDFLTMGLC GGFTNVGDYS AAQPQSSADG GFQLGDTFAA EPGDTQSQNW 360 GSFINVVSDD SAQCNCNAAI HLDQMYYLFG GTGGGEPSDT QSRHWGS

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MARRKIPIGL IAHRQKRAAT YAKRKESLRK KAEELSTLCG VRVAFVCAGP VVPGGGGGAA  60
GKEEVWESEE GVLAEYRALP PEARAQHAHR VYLKEEVGKE RAKLARVRQD GAFPSWDAAL  120
DGITADEARA LLESIDAARA AANARREALG LPDDGNGVDD DGGLDLQQQQ EHVPPGGSDA  180
VVVPVGHGVL QYTGSGGGNQ MQTTPAADGI NCADLYGAVP WDDTFQPQVM RTGDHFVPMD  240
GYLWQAPGNG WPDLATGCTN ESCSCNAAAA AAAMPAMYPP TLDTVHGSFL AAPAQPIPIA  300
FSTSTDFIDA PNDFLTMGLC GGFTNVGDYS AAQPQSSADG GFQLGDTFAA EPGDTQSQNW  360
GSFINVVSDD SAQCNCNAAI HLDQMYYLFG GTGGGEPSDT QSRHWGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31630.1	1e-10	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G16990.1