PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G16070.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 548aa MW: 57886.6 Da PI: 6.8209

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G16070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.1	7.6e-21	106	226	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenlnkr 60 +Wt+ +v++Li+++ +++++ + +kk++W++vs++m+e g +sp+qC++k+++lnkr ONIVA01G16070.1 106 KWTDGMVRLLINVVYSVGDDGDGVAaggaaggkasagaaghgkaggsgshgahgqaaaqQKKGKWKSVSRAMMESGHMVSPQQCEDKFNDLNKR 199 69999999999998855555443222233444455555555556666666666666666********************************* PP trihelix 61 ykkikegekkr.tsessstcpyfdqle 86 yk++ + +++ +++++++++++d ++ ONIVA01G16070.1 200 YKRVVDLLGRGkACKVVENHALLDAMD 226 *****9967**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MGPRGVVGSA AMLGLEMHLA HPQMHAAAYQ QPDPHGGGGG GGFQQQVAAV RQQQQQSYSP 60 YSAGASSRVI KAPGHDDGMG NGAGKGGVVQ QQQQPGSAGC PWTRMKWTDG MVRLLINVVY 120 SVGDDGDGVA AGGAAGGKAS AGAAGHGKAG GSGSHGAHGQ AAAQQKKGKW KSVSRAMMES 180 GHMVSPQQCE DKFNDLNKRY KRVVDLLGRG KACKVVENHA LLDAMDELTH KAKDEARKLL 240 SSKHLFFREM CAYHNSGAAA AAAAHGPHGA GAAGVEATAC FHHPPPASMA AASSAARQAA 300 AAAPSLGMKD SSAGPEDDED DSEDVPSSNE VDDDDDDDDD DDDEVGPGMK SRRIYGGHRV 360 HHHHHHHNGH HKRRRGDDVS SAGAGDDDDE DGVKRARGAA SAAGGGDDEG PSAVQQLQSE 420 LAAAVAGGGD PQQVRQWVRR RTVEVEEQQV AHEVRAYHLE RQRLKWERFR ANKERDMERA 480 RLRNDRLRID GRRMLLLLRQ KDLDFDIAEA NSSSVDHLTS SAPPPLAALQ QQQQPLGSSP 540 STAAGHPN

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MGPRGVVGSA AMLGLEMHLA HPQMHAAAYQ QPDPHGGGGG GGFQQQVAAV RQQQQQSYSP  60
YSAGASSRVI KAPGHDDGMG NGAGKGGVVQ QQQQPGSAGC PWTRMKWTDG MVRLLINVVY  120
SVGDDGDGVA AGGAAGGKAS AGAAGHGKAG GSGSHGAHGQ AAAQQKKGKW KSVSRAMMES  180
GHMVSPQQCE DKFNDLNKRY KRVVDLLGRG KACKVVENHA LLDAMDELTH KAKDEARKLL  240
SSKHLFFREM CAYHNSGAAA AAAAHGPHGA GAAGVEATAC FHHPPPASMA AASSAARQAA  300
AAAPSLGMKD SSAGPEDDED DSEDVPSSNE VDDDDDDDDD DDDEVGPGMK SRRIYGGHRV  360
HHHHHHHNGH HKRRRGDDVS SAGAGDDDDE DGVKRARGAA SAAGGGDDEG PSAVQQLQSE  420
LAAAVAGGGD PQQVRQWVRR RTVEVEEQQV AHEVRAYHLE RQRLKWERFR ANKERDMERA  480
RLRNDRLRID GRRMLLLLRQ KDLDFDIAEA NSSSVDHLTS SAPPPLAALQ QQQQPLGSSP  540
STAAGHPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-43	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G16070.1