PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G14280.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 306aa    MW: 33296.1 Da    PI: 6.6762
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G14280.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73.1e-181050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ri n+  r  tf kRr g+lKKA+EL +LCd++++++++++
  ONIVA01G14280.1 10 RIANDATRRATFKKRRRGLLKKASELATLCDVDACLVVYGE 50
                     899************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MARKKIVLDR IANDATRRAT FKKRRRGLLK KASELATLCD VDACLVVYGE GDAEPEVWPS  60
TEVAMNVLRQ FRALPEMEQC KKMMNQEDFL RLRIGKLKEQ LRKMDRDNHE RETLILLHDA  120
LQGRLGTYES LSVEQLTSVD CLASARLKVI TDRLVEIRAP NEDGQVLVPP PPPPPPALPA  180
PPPPPAPMLP LAPPPTHVTP AMPLSSMPPP AFHGMNHHHH QNHFINHGGN DQNAWLMNVA  240
RNGGDLGALV YSAFASSSSS NTGGAGTSAA GAAAPGPDMM DLANPDMPGF GWPWDDDSAG  300
PSFPPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKIVLDRIANDATRRATFKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-26M-type_MADS family protein