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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G08650.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 275aa MW: 30788.7 Da PI: 9.4035 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99 | 1.8e-31 | 49 | 98 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ ONIVA01G08650.2 49 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 98 79***********************************************8 PP | |||||||
2 | K-box | 101.7 | 9.6e-34 | 117 | 212 | 4 | 99 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 s++ ++e +a+++qqe++kL+++i++Lq+ +R ++G++++++sl++L+q+e++Lek++ kiR++Knell++++e++qk+e elq++n++Lr+ ONIVA01G08650.2 117 SNS-GtVAEVNAQHYQQESSKLRQQISSLQNANRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRS 209 333.25999************************************************************************************* PP K-box 97 kle 99 k+ ONIVA01G08650.2 210 KVV 212 986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence |
MMSMMTDLSC GPSSMTELTA AAAPAGSGSS AAVAAGSSEK MGRGKIEIKR IENTTNRQVT 60 FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN SVKSTVERYK KANSDTSNSG 120 TVAEVNAQHY QQESSKLRQQ ISSLQNANRT IVGDSINTMS LRDLKQVENR LEKGIAKIRA 180 RKNELLYAEV EYMQKREVEL QNDNMYLRSK VVENERGQQP LNMMGAASTS EYDHMVNNPY 240 DSRNFLQVNI MQQPQHYAHQ LQPTTLQLGQ QPAFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-104 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G08650.2 |