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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G07130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 201aa MW: 23104.8 Da PI: 9.8493 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.2 | 7e-26 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA ELSvLCda+v viifss+gkl+e + OGLUM12G07130.1 10 RIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELA 58 8*********************************************965 PP | |||||||
2 | K-box | 52.4 | 2.3e-18 | 88 | 172 | 16 | 100 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +q + L++ei+ Lqr +R G + ++++l L+ Le+ Le + +iR++K++++ ++i+ l++ke l+e+n++L++k++e OGLUM12G07130.1 88 VAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKE 172 55677778**************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MVRGKVQMRR IENPVHRQVT FCKRRGGLLK KARELSVLCD ADVGVIIFSS QGKLHELATN 60 GNMHNLVERY QSNVAGGQME PGALQRQVAE QGIFLLREEI DLLQRGLRST YGGGAGEMTL 120 DKLHALEKGL ELWIYQIRTT KMQMMQQEIQ FLRNKEGILK EANEMLQEKV KEQQKLYMSL 180 LDLHSQQPTQ PMTYGNRFFS I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-60 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM12G07130.1 |