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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G28660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 200aa MW: 22159 Da PI: 7.0583 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.8 | 6.7e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s OGLUM06G28660.1 9 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 33.5 | 1.7e-12 | 83 | 140 | 36 | 98 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++GedL+ L++ eL+ Leq+++ +lk ++++++q+e+ +kk k e+ k+L+++l OGLUM06G28660.1 83 QQRMGEDLDGLEFDELRGLEQNVDAALK-----EYHVITTQTETYKKKVKHSYEAYKTLQQEL 140 699************************7.....59************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP 60 STDIKGIFDR YQQAIGTSLW IEQQRMGEDL DGLEFDELRG LEQNVDAALK EYHVITTQTE 120 TYKKKVKHSY EAYKTLQQEL GLREEPAFGF VDNTGGGWDG GAGAGAGAGA AADMFAFRVV 180 PSQPNLHGMA YGGNHDLRLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-45 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM06G28660.1 |