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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM06G04290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 26095.7 Da PI: 7.4641 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.4 | 1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+ OGLUM06G04290.1 9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 90.3 | 3.4e-30 | 87 | 175 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ s +qe+ kLk ++e Lq++qR+llGedL +LslkeL+qLe+q+e+sl +iRs Kn+ ll+q+ el++ke++l ++nk+L++k++e OGLUM06G04290.1 87 ETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIERSLMNIRSSKNQQLLDQVFELKRKEQQLLDANKDLKRKIQE 175 44567899*******************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS 60 SCMYKTLERY RSCNYNLNSC EASAALETEL SNYQEYLKLK TRVEFLQTTQ RNLLGEDLVP 120 LSLKELEQLE NQIERSLMNI RSSKNQQLLD QVFELKRKEQ QLLDANKDLK RKIQETSGEN 180 MLHISCQDVG PSSHASEDNQ EFLHHAICDP SLHIGYQAYM DHLNQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-75 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM06G04290.1 |