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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G06890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 28696.3 Da PI: 5.3976 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.6 | 1.2e-26 | 36 | 84 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ie++ rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+ OGLUM05G06890.1 36 IEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 84 99*********************************************95 PP | |||||||
2 | K-box | 47.9 | 5.8e-17 | 102 | 196 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLsl.keLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 s+ + ++e +a+++qqe+akLk+ i Lq+++R ++ +L+ L++ +L ++ +L +l+kiR++Kne+l+++ie++q++e elq++n++ ++ OGLUM05G06890.1 102 SNASTVAEINAQHYQQEAAKLKQHITYLQNSNRFII--SLSCLDFfFQLDKVV-HLVIGLEKIRARKNEYLCAEIEYMQRRETELQNDNMYSKS 192 34444999**********************977765..788777524666664.5889********************************9999 PP K-box 97 klee 100 +++e OGLUM05G06890.1 193 EVAE 196 8875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SDGSGIEDTA DRQVTFCKRC NGLLKKAYEL 60 SMLCDAEVAL IVFSSRGRLY EYSNNSVEET IERYKKANSD TSNASTVAEI NAQHYQQEAA 120 KLKQHITYLQ NSNRFIISLS CLDFFFQLDK VVHLVIGLEK IRARKNEYLC AEIEYMQRRE 180 TELQNDNMYS KSEVAESERG LQTVNMMGSA STSEYVQNMI HYDPGNFLQF NIMQQLASLS 240 IILNRRTERP HSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 6e-67 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM05G06890.1 |