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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G14880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27473.1 Da PI: 9.2889 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.5 | 1.5e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsst++lyey+s OGLUM04G14880.1 10 RIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLVIFSSTDRLYEYAS 59 8***********************************************86 PP | |||||||
2 | K-box | 91 | 2.2e-30 | 75 | 170 | 3 | 98 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +++++++ +++ + +q+e+a L+++++nLq+++R+l+G+dL+ L +keLq Le+qLe s++ iR+kK++l++++i+el +k +++en++L + OGLUM04G14880.1 75 EQQHVANPNSELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKELQTLENQLEMSIRCIRTKKDQLMIDEIHELNRKGSLIHQENMELYR 168 56667788999**********************************************************************************9 PP K-box 97 kl 98 k+ OGLUM04G14880.1 169 KV 170 97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLVIFSS TDRLYEYAST 60 SMKSVIDRYG RAKEEQQHVA NPNSELKFWQ REAASLRQQL HNLQENHRQL MGQDLSGLGV 120 KELQTLENQL EMSIRCIRTK KDQLMIDEIH ELNRKGSLIH QENMELYRKV NLIRQENAEL 180 YKKLYETGAE TEANRDSTTP YNFGVIEEAN TPARLELNPP SQQNDAEQTA PPKLGQKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 3e-97 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G14880.1 |