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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G34160.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28440.6 Da PI: 9.2774 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.5 | 4.8e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklyey++ OGLUM03G34160.3 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSTKGKLYEYAT 59 9***********************************************86 PP | |||||||
2 | K-box | 107.9 | 1.2e-35 | 79 | 173 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s+e+ ++ ++++e++kLk+++e++q+ q+hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+kek+lqeenk L+k+l OGLUM03G34160.3 79 VLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKEL 172 55567788899********************************************************************************998 PP K-box 99 e 99 OGLUM03G34160.3 173 V 173 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALIIFST KGKLYEYATD 60 SCMDKILERY ERYSYAEKVL ISAESDTQGN WCHEYRKLKA KVETIQKCQK HLMGEDLESL 120 NLKELQQLEQ QLENSLKHIR SRKSQLMLES INELQRKEKS LQEENKVLQK ELVEKQKVQK 180 QQVQWDQTQP QTSSSSSSFM MREALPTTNI SNYPAAAGER IEDVAAGQPQ HVRIGLPPWM 240 LSHING |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 5e-71 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G34160.3 |