![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM03G08470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29528.2 Da PI: 7.3445 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.6 | 3.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss OGLUM03G08470.1 9 KRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 97.9 | 1.6e-32 | 77 | 171 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++++ ++e +qe+ kLk ++e Lq++qR++lGedL++Ls+keL+qLe+q+e slk+iRs+Kn+ ll+q+ +l+ ke++lq+ nk+Lrkkl+ OGLUM03G08470.1 77 SQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQ 170 4456777888999*******************************************************************************98 PP K-box 100 e 100 e OGLUM03G08470.1 171 E 171 7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence |
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS 60 SCMYKTLERY RSCNYNSQDA AAPENEINYQ EYLKLKTRVE FLQTTQRNIL GEDLGPLSMK 120 ELEQLENQIE VSLKQIRSRK NQALLDQLFD LKSKEQQLQD LNKDLRKKLQ ETSAENVLHM 180 SWQDGGGHSG SSTVLADQPH HHQGLLHPHP DQGDHSLQIG YHHPHAHHHQ AYMDHLSNEA 240 ADMVAHHPNE HIPSGWI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24260.1 | 3e-75 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM03G08470.1 |