![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM02G22050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26317.9 Da PI: 9.4582 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.1 | 4.7e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyeyss OGLUM02G22050.1 10 RIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 65.7 | 1.6e-22 | 72 | 165 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s++++++ a+ +s + +kL+ + +L r+ l GedL+ L++keLq+Le+qLe sl+++R+kK+++l+++i+el +k +++en++L kk OGLUM02G22050.1 72 SKDEQQAVANPNSELKGGSKLETTTAQLARK-SSLTGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKK 164 55555666666666677789*********99.9************************************************************9 PP K-box 98 l 98 + OGLUM02G22050.1 165 I 165 8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMIFSS TGRLYEYSST 60 SMKSVIDRYG KSKDEQQAVA NPNSELKGGS KLETTTAQLA RKSSLTGEDL SGLNVKELQS 120 LENQLEISLR SVRTKKDHVL IDEIHELNRK GSLVHQENME LYKKISLIHQ ENAELYKKIY 180 ETEGPSEVNR DSPTPYNFAV IEKTNVPVQL GLSTLPQHSD AEQSTAPKLG LQLNP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.1 | 5e-83 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM02G22050.1 |