![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM02G05240.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 206aa MW: 22681.7 Da PI: 7.0536 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s OGLUM02G05240.2 9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 17.9 | 1.3e-07 | 62 | 117 | 46 | 100 |
K-box 46 LslkeLqqLeqqLeks.lkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +sl+eL + q + + ++i +++ll +q+++l++ke+ l+++n L ++++e OGLUM02G05240.2 62 CSLRELIEHYQTVTNThFEEINHDQHQLLNQQLDNLRRKEHILEDQNSFLCRMINE 117 78888877777776553799******************************998875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence |
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP 60 TCSLRELIEH YQTVTNTHFE EINHDQHQLL NQQLDNLRRK EHILEDQNSF LCRMINENHH 120 QAAVGGGDVK AMVEMAPVLS MLTAAPAYYG EESSSTALQL TPPLHAVDAA AAAGFRLQPT 180 QPNLQDPGCS SSSFHAAAAG HGLQLW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G20240.1 | 2e-32 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM02G05240.2 |