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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G00350.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 481aa MW: 53320.3 Da PI: 7.8921 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.9e-27 | 50 | 99 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s OGLUM02G00350.2 50 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFAS 99 8***********************************************86 PP | |||||||
2 | K-box | 71.7 | 2.2e-24 | 117 | 212 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +s+ + e +++ +++ e+++L k+ie ++ + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr + OGLUM02G00350.2 117 NSSAHEEGEESCKWRSEATNLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQ 210 3444467778889*******************************************************************************98 PP K-box 98 le 99 + OGLUM02G00350.2 211 CK 212 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence |
MAAAAAGMGG GGGVQQQETT TTVVQVAAEA SRKKVEVRSA GRRGRREMRR IEDATSRQVT 60 FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGRLYQFASA SSDLQRTIDR YLNHTKNSSA 120 HEEGEESCKW RSEATNLGKK IEAIEGYKSK LLGEGLGSCS VQELQELEVQ LEKSLCSIRQ 180 KKQKMLMDQI LELREKEMNL LKENMVLRDQ CKALSSPWST SVGELKNKQA DDDVHRHEDY 240 SGGGVRDDDD RRMMEDVETD LAAANQAGKV LKKGKKKQAK DELDRQKQAE KKRRRLEKAL 300 ANSAAIISEL EKKKQKKREE QQRLDEEGAA IAEAVALHVL IGEDSDEPCH LMLNKHRRCN 360 HWDHSAGFDF AVDAQGADIY PPDGLIQCAD HVYAPKGRCI DWGIGQPLPS LGEVKDLQLQ 420 APCYQGMFHQ SVACPGFIAA QAVSSLQIGG DSSDITSPSQ GATVVNRMLG ATNRLNLYRE 480 I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 272 | 317 | KKGKKKQAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKKQKK |
2 | 275 | 295 | KKKQAKDELDRQKQAEKKRRR |
3 | 291 | 317 | KKRRRLEKALANSAAIISELEKKKQKK |
4 | 292 | 318 | KKRRRLEKALANSAAIISELEKKKQKK |
5 | 292 | 296 | KRRRL |
6 | 293 | 316 | RRRLEKALANSAAIISELEKKKQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-47 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM02G00350.2 |