PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT40060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28263.3 Da    PI: 9.0071
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT40060genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.4e-32958150
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
              krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  OIT40060  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
              79**********************************************95 PP

2K-box1034e-3480169998
     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 e++++s++qe++kLk++ e Lqr+qRhllGedL++LslkeLq+Le+qLe +l + R++K++++ eq+eel++ke++l + nk+L+ k+
  OIT40060  80 CGERETQSWYQEVSKLKAKFEALQRTQRHLLGEDLGPLSLKELQNLEKQLEGALAQARQRKTQIMAEQMEELRRKERQLGDVNKQLKIKV 169
               67899*********************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSS  60
GITKTLERYQ RCCLNPQDNC GERETQSWYQ EVSKLKAKFE ALQRTQRHLL GEDLGPLSLK  120
ELQNLEKQLE GALAQARQRK TQIMAEQMEE LRRKERQLGD VNKQLKIKVS LELSSLEAEG  180
QGLRALPFPW TCNASAGSSS FAVHPSQSNH MECEPDPVLQ IGYHHYMAAE GASGSRTMAV  240
ESNIIHGWGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-96MIKC_MADS family protein