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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT36953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 29063.9 Da PI: 9.8352 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKK +E+S+LCda+va+i+fs +gkl+eys+ OIT36953 9 KRIENKISRQVTFSKRRSGLLKKTHEISILCDADVALIVFSAKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 96 | 5.8e-32 | 76 | 173 | 2 | 99 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ ++++++ e+++ e+ kL ++ie Lqr++Rh++GedL+s l+e + LeqqL+++lk+iR++Kn+l++e+i++lqkkekelqe+n+ ++kkl+ OIT36953 76 AERKLNANDSEPKENWTLEYPKLMSRIELLQRNIRHYMGEDLDSFGLREFHGLEQQLDTALKRIRTRKNQLMHESISQLQKKEKELQEQNHLMSKKLK 173 5566777888889*******************************************************************************999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KTHEISILCD ADVALIVFSA KGKLFEYSTE 60 SSMESILERY ESYSYAERKL NANDSEPKEN WTLEYPKLMS RIELLQRNIR HYMGEDLDSF 120 GLREFHGLEQ QLDTALKRIR TRKNQLMHES ISQLQKKEKE LQEQNHLMSK KLKGNEKQQT 180 AHAQWGQSNP GQSSTPVILP QIPSQSPPHI PNLTIGGPFQ STEFTSTDEG QTRHGSNSLI 240 PPWMLHHLHN KG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-79 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT36953 |