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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT31440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 494aa MW: 54762.1 Da PI: 6.5908 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.2e-17 | 157 | 206 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OIT31440 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.1 | 4.3e-13 | 249 | 299 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g OIT31440 249 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 299 89********.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence |
MMLDLNLSAI YDEKVPEGSV ADESGTSNSS ARNAEASSSA GDDDTCSTRA GDMFAFNFDI 60 LKVGGAETSR SCSNNDDDQD GYGENRRVTQ SEFVTRQLFP LDGSHTSREP DWVDLSFDPP 120 NTVSFREAEI VRAQQQQQQQ QPQQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 180 QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNLSDYEE DMKQMKSLSK EEFVHVLRRQ 240 STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR 300 EAVTNFEPST YEGETISNPQ SAGSQQDLDL NLGIATSSPK ENERMGSFQY HPYDMQDATK 360 SQMDKSGPAI VGSSHFKAQP VTSEQAHLWN GVYSNFFPSY EERASGKRID IGSSQGRPNW 420 ALQMHGQVGT TPMSMFTAAA SSGFSTPATT ASASPMSGPN ANTNTPNLSF ASYSTPSTNT 480 THYYYQIRPP LPHP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-117 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT31440 |