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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT29762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27667.5 Da PI: 9.1346 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s OIT29762 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 101.2 | 1.4e-33 | 81 | 173 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++++++++ ++e+ +Lk+++e Lqr+qR+llGedL++Ls k+L+qLe+qLe slk+iRs+K++++l+q+ +lq++e++l e nk Lr+klee OIT29762 81 SQSATDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGTLSTKDLEQLENQLEASLKQIRSRKTQFMLDQLADLQQREQMLAESNKHLRRKLEE 173 4688999***********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SSMMKTIEKY QRCSYATLEA SQSATDTQNN YHEYLRLKAR VELLQRSQRN LLGEDLGTLS 120 TKDLEQLENQ LEASLKQIRS RKTQFMLDQL ADLQQREQML AESNKHLRRK LEESAAGIPL 180 RLCWEDGTQA MQVNRLPQTE GFFQPLGLTS SPQFGYNHVG TDEVNGGASA HNMNGFIPGW 240 ML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.2 | 1e-97 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT29762 |