PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT29762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27667.5 Da    PI: 9.1346
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT29762genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  OIT29762  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
              79***********************************************96 PP

2K-box101.21.4e-33811738100
     K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
               s++++++++ ++e+ +Lk+++e Lqr+qR+llGedL++Ls k+L+qLe+qLe slk+iRs+K++++l+q+ +lq++e++l e nk Lr+klee
  OIT29762  81 SQSATDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGTLSTKDLEQLENQLEASLKQIRSRKTQFMLDQLADLQQREQMLAESNKHLRRKLEE 173
               4688999***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SSMMKTIEKY QRCSYATLEA SQSATDTQNN YHEYLRLKAR VELLQRSQRN LLGEDLGTLS  120
TKDLEQLENQ LEASLKQIRS RKTQFMLDQL ADLQQREQML AESNKHLRRK LEESAAGIPL  180
RLCWEDGTQA MQVNRLPQTE GFFQPLGLTS SPQFGYNHVG TDEVNGGASA HNMNGFIPGW  240
ML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.21e-97MIKC_MADS family protein