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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT26419 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 201aa MW: 23062.9 Da PI: 8.7637 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.3 | 9.5e-24 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gk ye OIT26419 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKRYEL 57 79*******************************************9985 PP | |||||||
2 | K-box | 56 | 1.7e-19 | 83 | 174 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++++a + e++ Lk eie Lqr + + G + ++++l eL++Le+ Le + +iRs K+++++++i+ l++ke lq +nk+L+ k+ee OIT26419 83 AKDKQALDPKGEINMLKHEIEVLQRGLSYMYGGGAGTMTLDELHSLEKYLELWMFHIRSAKMDIMFQEIQLLKNKEGILQAANKYLQDKIEE 174 55666677788******************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKRYELATK 60 GTMQGLIEKY LKSTRGAEVA EEAKDKQALD PKGEINMLKH EIEVLQRGLS YMYGGGAGTM 120 TLDELHSLEK YLELWMFHIR SAKMDIMFQE IQLLKNKEGI LQAANKYLQD KIEEQYPVPN 180 MTSTLTDFQC PLTVQNEIFQ F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 7e-83 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT26419 |