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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT21895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28487.1 Da PI: 9.2766 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+eys+ OIT21895 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 105.3 | 7.6e-35 | 76 | 174 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ +++++++ s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+Le+qL+++lk iRs+Kn+l++e+i+elqkk k+lqe+n++L+k+++e OIT21895 76 AERQLTATDHETPGSWTLEHAKLKARLEVLQRNQRHYAGEDLDSLSMKELQNLEHQLDSALKYIRSRKNQLMHESISELQKKDKALQEQNNKLSKQVKE 174 66777788888899**********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYSTD 60 SCMERILERY ERYSYAERQL TATDHETPGS WTLEHAKLKA RLEVLQRNQR HYAGEDLDSL 120 SMKELQNLEH QLDSALKYIR SRKNQLMHES ISELQKKDKA LQEQNNKLSK QVKEREKELA 180 QQTQWEQQSH DHLNSSSFVL SQPLSSLHLG EAYPTAGDNG EVEGSSRQQQ QNTVMPPWML 240 RHLNN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-105 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT21895 |