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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT21550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26387 Da PI: 9.7701 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.2 | 1.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sstgkl+e++s OIT21550 9 KRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFIS 59 79***********************************************86 PP | |||||||
2 | K-box | 97.9 | 1.5e-32 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yqk+ g++l+++++e++q++l+kLk+ ++nLqre+R+++Ge+L++L++++L++L +++++slk iR++K++++ +qie+ +kk ++++e++++L +++ OIT21550 71 YQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLQREIRQRMGESLNDLNYEQLEELNENVDNSLKLIRERKYKVIGNQIETYKKKVRNVEEIHRNLLLEFD 169 899999***************************************************************************************987765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMISS TGKLHEFISP 60 SVTTKQLFDL YQKTVGVDLW NSHYEKMQEQ LRKLKDVNRN LQREIRQRMG ESLNDLNYEQ 120 LEELNENVDN SLKLIRERKY KVIGNQIETY KKKVRNVEEI HRNLLLEFDA RQEDPYGLVE 180 QEGDYNSVLG FPNGGPRILA LRLQPNHQPN HHLHSGGGSD ITTFALA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-92 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT21550 |