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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT06584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 642aa MW: 70598.5 Da PI: 8.7475 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.3 | 1.6e-07 | 64 | 110 | 4 | 54 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +GVr ++++g+++ Irdp + k +lg+f t +eA ka+ + ++e OIT06584 64 TGVR-NRRNGKYAGVIRDPI----KkKGAWLGTFSTVQEASKAYFSKKCEFE 110 59*9.888**********72....35******************98888776 PP | |||||||
2 | AP2 | 32.1 | 2.8e-10 | 163 | 203 | 3 | 47 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 ++GVr +k + +++A Ird k+kr++lg+f +a+eA ka+ OIT06584 163 FTGVRKRK-NRKYAAVIRDlI----KKKRVWLGTFSSAQEASKAYF 203 78***999.8*********76....35*****************95 PP | |||||||
3 | AP2 | 36.8 | 9.6e-12 | 263 | 309 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ++ GVr + +g + +eIr p ++ ++f+lg++gtaeeA +a+ +++ OIT06584 263 HFIGVRKRN-SGNYTSEIRNP----ISkRKFWLGTYGTAEEASQAYQSKKLE 309 789***888.7*********7....246*****************9877766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence |
MMRHNFLGFG REKTGKQGGE SKNCEQFQPD SSGAELSPLA NDQSVNTADS SRNARSNSPE 60 IISTGVRNRR NGKYAGVIRD PIKKKGAWLG TFSTVQEASK AYFSKKCEFE NLNQGKQGGE 120 SKSFEQLQPD SSGGELTPVA YDQALNTAGV SRNARSNSSE TMFTGVRKRK NRKYAAVIRD 180 LIKKKRVWLG TFSSAQEASK AYFSKKCGFE KLNQGKQGGE SKNCEQLQPD SSGGELSPLA 240 NDQSLNTAGV SRSGRSNSPE TTHFIGVRKR NSGNYTSEIR NPISKRKFWL GTYGTAEEAS 300 QAYQSKKLEF QKQLKAKQQC SKLTSSAREK QDGKKKLVNV KLGHEAVNRE GLQPESAGGS 360 SSSEIDVPIS NSLDGGSDQG IDFHEIIHSM RFRKGKSGKY TTEITSPISM TNNLLATLGP 420 TEEAFHANPS KKLDFQSSEK VELQSHMPTD STAGEKHAGQ EDEDLWMGQW VQLPGDRTVK 480 LSLRLGLPII DNYGSLLEKT EQLDPSITKN SLGTLGPTEE AFHANPPKKL DFQISEKVEL 540 QSNMPTDSTA GEKRVGQEDE DLWMGQWVQL QTYNRQINLR DHLVINHGTS SSSNNPSKPC 600 VFNSIDTTIE EVSIIEGATG INPPLEDDLK VKKYESCADI IS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 186 | RKRKNRKYAAVIRDLIKKKR |
2 | 168 | 187 | RKRKNRKYAAVIRDLIKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.1 | 3e-13 | ERF family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT06584 |