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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT03126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 478aa MW: 53139.6 Da PI: 6.3947 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.7 | 1.6e-14 | 197 | 256 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g OIT03126 197 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 256 57*******************666664478446**********99*************98 PP | |||||||
2 | AP2 | 49.9 | 7.8e-16 | 299 | 350 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g OIT03126 299 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 350 57****************988532...5************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence |
MAPDNNNWLS FSLSSMEMLN SSSSQSSNML QSADSNHYYF ADNNFFPHGW TNSKSQVMYS 60 EGEKQTINDD SLIFYSQIHN QQPPPKLEDF LGGETTETQD SSLTHMYDHG GSAAGAGYFN 120 GGFQTFSANS GSEVDDSQVM GTEFTTESSN ELGYSQCPTG ALSLAVNTTT TTSEKAIVAV 180 DSESCKKITD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE 240 DKAARAYDLA ALKYWGPTAT TNFPVSNYNK ELVDMKNMTK QEFIASLRRK SSGFSRGASI 300 YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMN 360 RYDVEAIMKS ALPIGGAAKR LKISLESEQK PSLNNNYQHQ TQCSSSINFG PINPVSAIPC 420 GVPYDANQPF YHHSFFPHLQ YSNNDGPSDT SGTMTNMIAA MPLLQSPAEI FIWPHQSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.1 | 1e-158 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT03126 |