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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT01006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 455aa MW: 50741.9 Da PI: 6.4625 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 148 | 197 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OIT01006 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.7 | 2.8e-13 | 240 | 289 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k OIT01006 240 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCS 289 89********.7******5553..2.26**********99**********9865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence |
MFDLNLGFEE FAMDDDTVHV SYETTTSEKL RELQMENSGT SNSSIVNVET SSTAGDDEFF 60 SCSDDRRRND GYAFDILKGN EYEESEFVTK ELFPLTGGES AAAELLSPQQ WLDLSANYGG 120 TAEQRIIVVP QQRQQVKKSR RGPRSKSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT 180 AHAAARAYDR AAIKFRGLDA DINFNVADYH DDLKQMSNFT KEEFVHILRR QSTGFSRGSS 240 KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIEAARA YDKAAIKCSG KEAVTNFELS 300 TYEGELSTED NGGASHNLDL NLGIASSSLA DEQHGNSYQM HSPTTIGSKL PHCRQPLTDR 360 PLLWNGVNTS VFPTFKGTAI GKGMEVDSSP NWTRQDQHPY GGSPSVPLFS TAASSGFANS 420 TSAAAHQHHF STVPLPYHHS PSLANMNFAH YYCRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-104 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT01006 |