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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDY03495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24620.2 Da PI: 8.9744 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.2 | 1.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n s rqvtfskRr+g++KKA+ELS+LCdaevavi+fs+tgkl+e+ss RDY03495.1 9 KRIDNASSRQVTFSKRRTGLFKKAQELSILCDAEVAVIVFSNTGKLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 60.6 | 6.5e-21 | 81 | 160 | 11 | 89 |
K-box 11 eakae.slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 e+ka+ + + ++ L++ei +L+++q +llG+dL+ L lkeLq+LeqqL+++l +++++K+ell+eq+e ++ +e++++e RDY03495.1 81 ESKAQkEDFKVVEILREEIAKLETKQLQLLGKDLTGLGLKELQNLEQQLNEGLLSVKARKEELLMEQLELSRVQEQRIEE 160 44444034455788**************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MGRGKIEIKR IDNASSRQVT FSKRRTGLFK KAQELSILCD AEVAVIVFSN TGKLFEFSSS 60 GMKRTLSRYN KCLGSADVVA ESKAQKEDFK VVEILREEIA KLETKQLQLL GKDLTGLGLK 120 ELQNLEQQLN EGLLSVKARK EELLMEQLEL SRVQEQRIEE FRCLFPQSER VVPSYLQHQH 180 TERKNTFVNT GARCLNLANN CGNEKGGSDT AFHLGYY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 5e-52 | MIKC_MADS family protein |