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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX90868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | AP2 | ||||||||
Protein Properties | Length: 654aa MW: 72900.7 Da PI: 6.7618 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.4 | 6.3e-12 | 241 | 297 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aaka++ a++k++g RDX90868.1 241 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 297 78*******************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 47.8 | 3.5e-15 | 430 | 481 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RDX90868.1 430 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 481 78****************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence |
MSNWLGFSLT PHLRIDEEFE RENQEREGGY PPSHPHLSVM PLRSDGSLCV ADSFTHSAAP 60 QEWRYDNAIG GGNSNEEGPK LEDFLGCYSN SPMAESKVFC QDSQHDQNQG QNNVSKINVN 120 VAPSFCTNAE IETGESLTNP SSLLQSFHAY NDNSHALIPT NGMYKSWLAQ TQFSEGKPSA 180 EANGCNFNSL SLTMSSSVQN GVGAISSVQV SEDNRKRIMA KSHSREPVPR KSIDTFGQRT 240 SQYRGVTRHR WTGRYEAHLW DNSCRKEGQT RKGRQGGYDK EEKAAKAYDL AALKYWGPTT 300 HINFPVRFLK TCTLFSFAKV LPLLLVLQQY KIEARELNYL EKSNISYVFN LCGFNHYIVT 360 VITLHVYRFL NAQLSTYEKE LEEMKHMTRQ EFVANLRSKF SLSPSYSTWK ESSFLFPSAR 420 KSSGFSRGAS VYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR 480 GTSAVTNFDI SRYDVKRICS SSTLIAGDLA KRSPKELVPA TAATDDFNSS GSSMPAQPPP 540 MAITDGEHSD ELSNMMWNAN SDEQAQNESA NMNNGTESSQ QVSPSNKDAL NPQSPKCSVN 600 EFGVGGSADY GHGYFTLDGP KFDDGNNESD HMNTNRLGNL GLVNQVPMFA LWNE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 2e-93 | AP2 family protein |