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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX71154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 306aa MW: 35504.5 Da PI: 9.7426 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.5 | 9.7e-30 | 85 | 135 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey+s RDX71154.1 85 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIS 135 569**********************************************86 PP | |||||||
2 | K-box | 67.7 | 3.8e-23 | 152 | 248 | 6 | 99 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedL..esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 g l+ +++e++ ++l+kLk+ +++L+r++Rh++Ge+L ++Ls+++L+ Le+++ +s+ kiR++K +++++ +++ +kk k+l++ n +L +l+ RDX71154.1 152 GDIdLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLelDDLSFQQLRTLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELK 248 33359********************************752279************************************************988876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
YTPSLLFLWQ LSLPIWERLF TSLHLFLFCV YEFLFTALPL ALLPPSLSPL LILVLGKGSK 60 RRSTQVVARF VVIDLEMGRG KIEIKLIENP TNRQVTYSKR RNGIFKKAHE LSVLCDAKVS 120 LIMFSKNNKM HEYISPGLST KKIIDQYQKT LGDIDLWRSH YEKMLENLKK LKDINNKLRR 180 QIRHRIGEGL ELDDLSFQQL RTLEEDMVSS IGKIRERKFH VIKTRTDTCR KKVKSLEQMN 240 GNLLLELKEK CVIHPQFLLH DEGDEESAVA LANGASTLYA FCQHHTHLNL PQHGEEPFKT 300 DDLRLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-61 | MIKC_MADS family protein |