PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RDX62358.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
Family MIKC_MADS
Protein Properties Length: 326aa    MW: 38103.1 Da    PI: 10.057
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RDX62358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.1e-3199149151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  RDX62358.1  99 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 149
                 79***********************************************86 PP

2K-box108.38.8e-361652641100
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 y++++ ++++++ + +++ e+++Lk++i+ Lqr++Rh++GedL+s+slkeLq+LeqqL+++lk+iR+++n+l++e+i+elqkkek +qe+n++L kk++
  RDX62358.1 165 YAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIK 263
                 566777888889999**********************************************************************************98 PP

       K-box 100 e 100
                 e
  RDX62358.1 264 E 264
                 7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
QHSTLALTVL SHDTTLYLSR RRKIHELTFP RSLRLICQPF NLTSWLIFFF FPCLGFGVFF  60
VKKGRTNCLS HYLGIIYNIF KTQKKKKTTK MGRGRVQLKR IENKINRQVT FSKRRAGLLK  120
KAHEISVLCD AEVALIVFSH KGKLFEYATD SCMEKILERY ERYAYAERQL VANDSESQGN  180
WTIEYTRLKA KIDLLQRNHR HYMGEDLGSM SLKELQSLEQ QLDTALKQIR TRRNQLMYES  240
ISELQKKEKV IQEQNNMLAK KIKEKEKVAA QQAQWEHPNH GVNASFLLPQ PLLNMGGNYR  300
EEAPEVGRNE LDLTLEPLYS CHLGCF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-105MIKC_MADS family protein