PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022149499.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

AP2

Protein Properties

Length: 486aa MW: 53593.9 Da PI: 6.2833

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022149499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.5e-17	141	190	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022149499.1 141 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 190 78*****************......55**********************998 PP
2	AP2	40.7	5.8e-13	233	283	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_022149499.1 233 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKCNG 283 79******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MWDLNDSPDH GGTDEFDGHS SPKTSIEGDD DRAKWVASIS NSSSSAVVME DGSDADEASA 60 GEGEPLVHRN DFPPATRQFF PLEDSNVGAA SSVGGGGSAV FPRARWVGVK FCQTEPLAAV 120 KPVAILHPIK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA 180 YDRAAIKFRG TEADINFSIE DYEEDLKQMG SLTKEEFVHV LRRQSTGYPR GSSKFRGVTL 240 HKCGRWEARM GQFLGKKYVY LGLFDSEIEA ARAYDKAAIK CNGKEAVTNF DPSIYENEPS 300 PTESSSGNVL EQNLDLKLGN SSSKQDNLTF GNHCQNGTKT IDLQNKESNP LESNILENDN 360 GRRYRFLEMD KMQSPSQTNL RSPPSIETTS HGHFERPMES QTLHNYSPHI NQSNSQIQLL 420 SSSNEGGVGS DELSLCLSEG HQWQRSGGSQ QFAIATAAAS SGFPQLPLSS SQNWLQKNGC 480 FLERPS

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MWDLNDSPDH GGTDEFDGHS SPKTSIEGDD DRAKWVASIS NSSSSAVVME DGSDADEASA  60
GEGEPLVHRN DFPPATRQFF PLEDSNVGAA SSVGGGGSAV FPRARWVGVK FCQTEPLAAV  120
KPVAILHPIK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA  180
YDRAAIKFRG TEADINFSIE DYEEDLKQMG SLTKEEFVHV LRRQSTGYPR GSSKFRGVTL  240
HKCGRWEARM GQFLGKKYVY LGLFDSEIEA ARAYDKAAIK CNGKEAVTNF DPSIYENEPS  300
PTESSSGNVL EQNLDLKLGN SSSKQDNLTF GNHCQNGTKT IDLQNKESNP LESNILENDN  360
GRRYRFLEMD KMQSPSQTNL RSPPSIETTS HGHFERPMES QTLHNYSPHI NQSNSQIQLL  420
SSSNEGGVGS DELSLCLSEG HQWQRSGGSQ QFAIATAAAS SGFPQLPLSS SQNWLQKNGC  480
FLERPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-117	AP2 family protein