PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1184s0001.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 566aa    MW: 63103.3 Da    PI: 6.6751
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1184s0001.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23122221398
                          EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          k+lt+sd+++ g +++p+++ae++       + ++ +   lt++d +g +W +++iyr++++r++lt+GW++Fv+ ++L +gD+v+F++d
  Kaladp1184s0001.1.p 122 KILTQSDANNGGGFSVPRQCAESIfpalnyeEDPPVQ--NLTITDVQGGEWIFRHIYRGTPKRHLLTTGWSKFVNNKKLVAGDTVIFMRD 209
                          89**************************996656656..69999********************************************65 PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          +  +++l+++++r
  Kaladp1184s0001.1.p 210 N-LTGKLYIGIRR 221
                          4.89999999997 PP
2Auxin_resp64.83e-22267351183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgv.sdldpvrWpnSkWrsLk 83 
                          aa++as++  Fev+ +P+++ ++Fvv+++ v +al+ +++vG+R+kma+e+edss+ +l +G v+ + + l+  +W+ S+W++L+
  Kaladp1184s0001.1.p 267 AAKQASKGLHFEVILYPSVGLPDFVVNADVVDRALSWRWAVGTRVKMAVESEDSSRPTLlQGYVSIIlNVLEGGQWRSSPWKMLQ 351
                          78999****************************************************999**999872567889*********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    
MFPINFPATQ TVLVDSDLWK ACAGDTFKVP SIDTRVYYFP EGHAELCDSP PPVAQLVCPI  60
VPCRVLHFRF FADRTTDEVF AAVSLQPVGC EYRWAPPASR SVSGRQIGGA EREGRRIESN  120
MKILTQSDAN NGGGFSVPRQ CAESIFPALN YEEDPPVQNL TITDVQGGEW IFRHIYRGTP  180
KRHLLTTGWS KFVNNKKLVA GDTVIFMRDN LTGKLYIGIR RLLRANSGRN GKRSLCVGEA  240
EGTGEEMDDG SWRAGSRRVS ARFVEAAAKQ ASKGLHFEVI LYPSVGLPDF VVNADVVDRA  300
LSWRWAVGTR VKMAVESEDS SRPTLLQGYV SIILNVLEGG QWRSSPWKML QVTWIEPDHL  360
QNVERLSPWQ VEYVEHTASR QPIHLPIEVR DPHIFQPLTA RTKEPRPMMG QEPHSMMAQG  420
DLRYSGLRTR NFLNPNIHLA SMQGARHLSD VSDVIGGDTH RMQNENMFPR SDMFVFRSRI  480
TEVNSGGYQL CSLPAESHSS LCSFGTEVGN TLPPGGINSI QLFGKIIYVE NPVENYQPYD  540
ATFLVSDSSK GDNESEGMEN QSHTS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-120ARF family protein