PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0975s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 23957.9 Da PI: 5.321 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.3 | 3.8e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ Cvl+p++ p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ ra +Pv+Gavg++ ++++ Kaladp0975s0001.1.p 2 SCNGCRVLRKGCSETCVLRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISKAPDSQRPALFQSLLYEACGRAVNPVSGAVGLLGTGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l+ Kaladp0975s0001.1.p 92 HVCQVAVETVLR 103 ******999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MSCNGCRVLR KGCSETCVLR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISKAPDSQR 60 PALFQSLLYE ACGRAVNPVS GAVGLLGTGN WHVCQVAVET VLRGGTLRSV PADLLDNGGQ 120 ARPPPADESS EEATCSNMCS IMRSGKQDTN KSGGVGVSPP GAAELDLSLS PSHEQQFDKR 180 GRAGSPSEES GTSFEMGQNG HFDVEEQLQL QPQRGSGEVK LLELFG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 7e-73 | LBD family protein |