PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0630s0072.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 20208.2 Da PI: 9.8856 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.7 | 8.2e-43 | 22 | 122 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+C+kd C++apyfpae+p kfa vh++FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq++ Kaladp0630s0072.1.p 22 PCAACKLLRRRCSKDeCAFAPYFPAEDPVKFATVHRVFGASNVNKMLQDLPAQHRGDAVSSLVYEANARVRDPVYGCVGAISALQQQIHV 111 7***********9977************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+lal+++e Kaladp0630s0072.1.p 112 LQAQLALTQAE 122 ******99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MKQERSAAAP LKKGVPAVVA TPCAACKLLR RRCSKDECAF APYFPAEDPV KFATVHRVFG 60 ASNVNKMLQD LPAQHRGDAV SSLVYEANAR VRDPVYGCVG AISALQQQIH VLQAQLALTQ 120 AEVLHLRSLS ASQAAAALRK TGDVITSPTA AVHHPHGSAL VPSSTSSLPA SKLAASDTAK 180 SSFLAADRSW W* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16530.1 | 2e-50 | LBD family protein |