PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0100s0079.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24599.4 Da PI: 5.151 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.7 | 3e-36 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++Cv+apyf ++ + +f +vhk+FGasnv+kll ++p ++r++a+ ++ yeA r+ dPv G+v++i +l+qq+++ Kaladp0100s0079.1.p 9 SCGACKFLRRKCTSECVFAPYFSYDEaATHFGAVHKVFGASNVSKLLMHIPVQHRTEAALTISYEAFSRMTDPVFGCVAHIYALHQQIAN 98 6**********************988689************************************************************* PP DUF260 90 lkaelallkee 100 l++e++l++++ Kaladp0100s0079.1.p 99 LQEEIELVGSQ 109 ******99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MPGQGSSSSC GACKFLRRKC TSECVFAPYF SYDEAATHFG AVHKVFGASN VSKLLMHIPV 60 QHRTEAALTI SYEAFSRMTD PVFGCVAHIY ALHQQIANLQ EEIELVGSQM AAGFPFTFPV 120 SQPTADKVSM NPAAFNLQQQ MDHHQQAQYI TNAGYGNSAA DQSYIYQCQQ LPFVWGSGEA 180 HSGNIDNYLN GEINEGLDHE PLLCSPLLNN NDNVTEIPNT AASGW* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-55 | LBD family protein |