PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0089s0088.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23491.5 Da PI: 7.4692 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128 | 4.2e-40 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC++dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +++ +++yeA+ar+rdPvyG+v++i++lqqq++ Kaladp0089s0088.1.p 8 PCGACKFLRRKCTTDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVQDRCETVVTIAYEAQARLRDPVYGCVAHIFALQQQVAI 97 7*************************99************************************************************** PP DUF260 90 lkaelallkeel 101 l+a+l+++k++l Kaladp0089s0088.1.p 98 LQAQLVQVKAQL 109 *******99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MASGVGSPCG ACKFLRRKCT TDCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVQ 60 DRCETVVTIA YEAQARLRDP VYGCVAHIFA LQQQVAILQA QLVQVKAQLA SNVMGNRNNA 120 TAHNMSNNNN TPSSEWPGLI YTLPNLQAYN NNHHHSVSPQ SSIESMEQNN GGVGDMKEET 180 LPYEIGSEQK KTRSYNDQLN ELQELAFRMM RD* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-55 | LBD family protein |