PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0088s0057.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28269.1 Da    PI: 9.241
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0088s0057.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.41.2e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdae a+iifs++gklye++s
  Kaladp0088s0057.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNKGKLYEFCS 59
                         79***********************************************96 PP
2K-box85.21.4e-28871741097
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          e+a + s+qqe+ kLk++++ Lqr+qR+llGedL++L+ keL+ Le+qL++slk+iR ++++ +l+ + +lq+ke +l+e+n +L+++
  Kaladp0088s0057.1.p  87 EKALELSSQQEYLKLKARYDALQRSQRNLLGEDLGPLNSKELEALERQLNSSLKQIRLTRTQTMLNTLTDLQRKEYMLNETNSSLKQR 174
                          44555689*****************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AELALIIFSN KGKLYEFCST  60
SSMPKTLERY QSCSYGEPAE TGASAKEKAL ELSSQQEYLK LKARYDALQR SQRNLLGEDL  120
GPLNSKELEA LERQLNSSLK QIRLTRTQTM LNTLTDLQRK EYMLNETNSS LKQRLFGEHH  180
QMNAPQWNPN APDNLGYAQQ ATQNQGDGFF VQLEPTLQIG PYNHEAVAPM DVVAAGPSVT  240
NYMHGRWLP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.21e-105MIKC_MADS family protein