PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0083s0068.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24284 Da PI: 4.94 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.1 | 1.1e-36 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++Cv+ pyf ++ + +fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA ar+ dPv G+v++i +l+qq+++ Kaladp0083s0068.1.p 7 SCGACKFLRRKCTSECVFVPYFSYDEaATHFAAVHKVFGASNVSKLLMHIPVQHRSEAAVTISYEALARMTDPVFGCVAHIYALHQQIAN 96 6**********************988689************************************************************* PP DUF260 90 lkaelallkee 100 l++e++ll+++ Kaladp0083s0068.1.p 97 LQEEIDLLGSQ 107 *****998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MTGQGSSCGA CKFLRRKCTS ECVFVPYFSY DEAATHFAAV HKVFGASNVS KLLMHIPVQH 60 RSEAAVTISY EALARMTDPV FGCVAHIYAL HQQIANLQEE IDLLGSQMAA GFPFTFPGSQ 120 PATENLSTNQ EAFNLQQQMG HHQQAQDIVN AGYGNGAADQ SYVNQFQQLP PVWGGEAHSG 180 NYDNYLNGEI NEGLDHEPLL CCQFLNNNGN ITEIPNNAVL GW* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-57 | LBD family protein |