PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0072s0078.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21748.9 Da PI: 7.5782 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.1 | 3.8e-30 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C + C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++ ++++ Kaladp0072s0078.1.p 2 SCNGCRVLRKGCRDTCILRPCLewidsPESQGHATIFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLGSGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelallke 99 +++++++e++l++ Kaladp0072s0078.1.p 92 HVCEVAVETVLQGG 105 *******9998765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MSCNGCRVLR KGCRDTCILR PCLEWIDSPE SQGHATIFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLGSGN WHVCEVAVET VLQGGKLQPL RDLARCSPDS 120 DEASEVAFQP LNSQMVKRMR RDMDKSGDVD LSLTMSCLAP DSGRSGSPSM DSEKSGTMRS 180 DGNGGRRRVD REVKLLDLFC * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 7e-74 | LBD family protein |