PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0060s0233.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 254aa MW: 27606.5 Da PI: 4.6121 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 37.3 | 5.7e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kaladp0060s0233.2.p 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDHTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLSEVVSK 69 899*************************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DHTYGITVQT GAKTVSSLHL KHCVQRYSIF 60 DFLSEVVSKV PDYSHSGTSG EVRTISRRRK AAGDDLTDSD EDSKRSRLPE TGHATGGGRG 120 RGRGRGRGRG RVGRMAEPDN VQHDFEPEAS MVNLDAAQAN DSKGRDLLSN VKEEADGLTN 180 PAVGKFDLNA EIKENESMPS SEVPDILSEH AVIKQERIPG WSLSEIDRLN INPLQLGSMN 240 SALDDEDYDE EDG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 128 | RGRGRGRGRG |
2 | 119 | 129 | RGRGRGRGRGR |
3 | 121 | 130 | RGRGRGRGRG |
4 | 121 | 131 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 3e-53 | NF-YC family protein |